《Nature》封面 癌基因组转录组变化启示录

【字体: 时间:2009年10月13日 来源:生物通

编辑推荐:

  生物通报道,加拿大英属哥伦比亚大学,加拿大Michael Smith基因组科学研究中心等处的科学家在癌症基因组和转录组的研究方面取得新的进展,相关文章Mutational evolution in a lobular breast tumour profiled at single nucleotide resolution发表在Nature杂志上,并被列为本期的封面文章。

  

生物通报道,加拿大英属哥伦比亚大学,加拿大Michael Smith基因组科学研究中心等处的科学家在癌症基因组转录组的研究方面取得新的进展,相关文章Mutational evolution in a lobular breast tumour profiled at single nucleotide resolution发表在Nature杂志上,并被列为本期的封面文章。

 

随着测序技术的进步,科学家们对癌症基因组以及转录组的研究变得越来越简单快捷,人类离解开癌症奥秘的一天也越来越近。

 

加拿大的科学家们用下一代测序方法研究来自一个雌激素-受体-阿尔法-阳性的转移性小叶乳腺癌患者的基因组和转录组。

 

从原发肿瘤被诊断出到出现转移之间的9年时间内,科学家们对患者的基因组和转录组的变化进行详细的跟踪研究。对同一患者转移肿瘤和原发肿瘤中的体细胞非同义编码突变所做比较,以及对基因组和转录组数据的组合分析。

 

研究结果表明,转移灶的体细胞中发现有32个非同义编码突变,并且对这些突变位点进行了突变频率的测试。在原肿瘤组织中以上32个突变点有5个同样发生高频率突变(in ABCB11, HAUS3, SLC24A4, SNX4 and PALB2),有6个突变点频率低(in KIF1C, USP28, MYH8, MORC1, KIAA1468 and RNASEH2A),有19个没在原发肿瘤组织中发现。

 

这些数据表明,在癌症患者体内有一种新的RNA编辑模式,重新编码SRP9COG3的氨基酸序列。研究者得出结论,不均匀性的单个核苷酸突变可导致乳腺癌低水平的扩散加剧疾病的发展进程。

 

封面背景图片所示为来自这项研究中所用原发小叶肿瘤的组织。

(生物通 小茜)

Nature 461, 809-813 (8 October 2009) | doi:10.1038/nature08489; Received 4 September 2009; Accepted 10 September 2009

 

Mutational evolution in a lobular breast tumour profiled at single nucleotide resolution

 

Sohrab P. Shah1,2,8, Ryan D. Morin3,8, Jaswinder Khattra1, Leah Prentice1, Trevor Pugh3, Angela Burleigh1, Allen Delaney3, Karen Gelmon4, Ryan Guliany1, Janine Senz2, Christian Steidl2,5, Robert A. Holt3, Steven Jones3, Mark Sun1, Gillian Leung1, Richard Moore3, Tesa Severson3, Greg A. Taylor3, Andrew E. Teschendorff6, Kane Tse1, Gulisa Turashvili1, Richard Varhol3, René L. Warren3, Peter Watson7, Yongjun Zhao3, Carlos Caldas6, David Huntsman2,5, Martin Hirst3, Marco A. Marra3 & Samuel Aparicio1,2,5

 

Molecular Oncology,Centre for Translational and Applied Genomics,

Michael Smith Genome Sciences Centre, BC Cancer Agency, 675 West 10th Avenue, Vancouver V5Z 1L3, Canada

Medical Oncology, BC Cancer Agency, 600 West 10th Avenue, Vancouver V5Z 1L3, Canada

Department of Pathology, University of British Columbia, G227-2211 Wesbrook Mall, British Columbia, Vancouver V6T 2B5, Canada

Cancer Research UK, Cambridge Research Institute, Li Ka Shing Centre, Robinson Way, Cambridge CB2 0RE, UK

Deeley Research Centre, BC Cancer Agency, Victoria V8R 6V5, Canada

Abstract

Recent advances in next generation sequencing1, 2, 3, 4 have made it possible to precisely characterize all somatic coding mutations that occur during the development and progression of individual cancers. Here we used these approaches to sequence the genomes (>43-fold coverage) and transcriptomes of an oestrogen-receptor--positive metastatic lobular breast cancer at depth. We found 32 somatic non-synonymous coding mutations present in the metastasis, and measured the frequency of these somatic mutations in DNA from the primary tumour of the same patient, which arose 9 years earlier. Five of the 32 mutations (in ABCB11, HAUS3, SLC24A4, SNX4 and PALB2) were prevalent in the DNA of the primary tumour removed at diagnosis 9 years earlier, six (in KIF1C, USP28, MYH8, MORC1, KIAA1468 and RNASEH2A) were present at lower frequencies (1–13%), 19 were not detected in the primary tumour, and two were undetermined. The combined analysis of genome and transcriptome data revealed two new RNA-editing events that recode the amino acid sequence of SRP9 and COG3. Taken together, our data show that single nucleotide mutational heterogeneit

婵犵數鍋為崹鍫曞箰閹间緡鏁勯柛顐g贩瑜版帒鐐婇柍瑙勫劤娴滈箖鏌i悢鐓庝喊婵℃彃婀遍埀顒冾潐閹稿摜鈧稈鏅濋埀顒勬涧閵堟悂寮崒鐐村€锋い鎺嶇劍閻﹀酣姊虹拠鎻掝劉缂佸甯″畷婵嬪箳濡も偓缁€澶愭煟閺冨倸甯舵潻婵囩節閻㈤潧孝婵炶尙濞€瀹曟垿骞橀幇浣瑰兊閻庤娲栧ú銊╂偩閾忓湱纾介柛灞剧懅椤︼附淇婇锝囩煉鐎规洘娲熼、鏃堝川椤栵絾绁梻浣瑰缁诲倿鎮ч幘婢勭喓鈧綆鍠楅悡娆愮箾閼奸鍤欐鐐达耿閺屾洟宕堕妸銉ユ懙閻庢鍣崜鐔肩嵁瀹ュ鏁婇柣锝呮湰濞堟悂姊绘担钘変汗闁烩剝妫冨畷褰掓惞椤愶絾鐝烽梺绉嗗嫷娈曟い銉ョ墦閺屾盯骞橀懠顒夋М婵炲濯崹鍫曞蓟閺囥垹骞㈡俊銈咃工閸撻亶鏌i姀鈺佺仭濠㈢懓妫楀嵄闁圭増婢橀~鍛存煟濞嗗苯浜惧┑鐐茬湴閸婃洟婀侀梺鎸庣箓濡瑧绮堢€n喗鐓冪憸婊堝礈濮橆厾鈹嶉柧蹇氼潐瀹曟煡鏌涢幇銊︽珖妞も晝鍏橀弻銊モ攽閸℃瑥鈪靛┑鈽嗗灠椤戝寮诲☉銏犵闁瑰鍎愬Λ锟犳⒑鐠囧弶鍞夊┑顔哄€楃划姘舵焼瀹ュ懐顦ㄥ銈嗘尵婵兘顢欓幒妤佲拺閻犲洠鈧櫕鐏侀梺鍛婃煥妤犳悂鍩㈤幘璇茬闁挎棁妫勫▓銉ヮ渻閵堝棛澧紒顔肩焸閸╂盯寮介鐔哄幈濠电偛妫欓崝鏇㈡倶閳哄偆娈介柣鎰级閸犳﹢鏌熼姘毙х€殿噮鍣e畷鎺懳旀担瑙勭彃

10x Genomics闂傚倷绀侀幖顐﹀磹閻熼偊鐔嗘慨妞诲亾妤犵偞鐗犻垾鏂裤€掓刊鐖剈m HD 闂佽瀛╅鏍窗閹烘纾婚柟鍓х帛閻撴洘鎱ㄥΟ鐓庡付闁诲繒濮烽埀顒冾潐濞叉粓宕伴幘鑸殿潟闁圭儤顨呴獮銏℃叏濮楀棗澧┑顔煎暣濮婃椽宕ㄦ繝鍌滅懆濠碘槅鍋呯划宥夊Φ閺冨牆绠瑰ù锝囨嚀娴犮垽姊洪幖鐐插姉闁哄懏绮撻幃楣冩焼瀹ュ棛鍘遍棅顐㈡搐椤戝懏鎱ㄩ埀顒€鈹戦悙瀛樼稇婵☆偅绮撴俊鐢稿箛閺夊灝宓嗛梺缁樶缚閺佹悂鎮℃担铏圭=濞达絽鎲″﹢鐗堜繆閻愯埖顥夐摶鐐烘煕瑜庨〃鍛矆閸℃稒鐓曢柍鈺佸暈缂傛岸鏌嶈閸忔稓鍒掑▎鎾虫瀬鐎广儱顦伴弲鎼佹煥閻曞倹瀚�

濠电姷鏁搁崑娑樜涙惔銊ュ瀭闁兼祴鏅滃畷鏌ユ倵閿濆骸浜為柍缁樻閹鏁愭惔鈥崇缂備椒鑳跺▍澧俰st闂傚倷绶氬ḿ褍螞濡ゅ懏鏅濋柨婵嗘川缁犳柨顭块懜闈涘婵☆偅蓱閵囧嫰骞樼捄杞扮捕缂傚倸绉崇欢姘跺蓟濞戙垹鍐€闁靛ě鍐f嫛婵犵數鍋涢悧濠囧储椤ョSPR缂傚倸鍊烽悞锔剧矙閹烘鍎庢い鏍仜閻掑灚銇勯幒鍡椾壕濡炪倧缂氶崡鎶藉箖瑜斿畷顐﹀Ψ閵堝棗濯伴梻渚€鈧偛鑻晶鏉戔攽閳ユ剚鍤熼柍褜鍓ㄧ紞鍡涘礈濮樿泛姹查柍鍝勬噺閸婂灚绻涢幋鐐垫噧濠殿喖鍟撮弻娑㈠籍閹炬潙顏�

闂傚倷绀侀幉锟犮€冮崱妞曞搫饪伴崨顓炵亰闂婎偄娲︾粙鎺楀吹閸曨垱鐓熼柟閭﹀墻閸ょ喖鏌曢崼鐔稿唉妤犵偞鐗犲鍫曞箣閻樻鍞堕梻浣告啞閻熴儱螞濠靛棭娼栧┑鐘宠壘鎯熼梺闈涱檧缁茬厧霉閻戣姤鐓熼柣妯夸含閸斿秶鎲搁弶鍨殻闁诡喓鍎甸弫鎾绘晸閿燂拷 - 濠电姷鏁搁崕鎴犲緤閽樺鏆︽い鎺戝閻鏌涢埄鍐$細妞も晜鐓¢弻娑㈠焺閸愭儳姣€闂佸湱鍎ら幐楣冦€呴悜钘夌閺夊牆澧界粔鐢告煕鎼淬垹鐏ラ柍钘夘樀楠炴﹢顢涘顐㈩棜婵犵數鍋為崹鍫曞箹閳哄倻顩叉繝濠傚暟閺嗭箓鏌i弮鍥仩缁炬儳銈搁弻娑㈠焺閸愵厼顥濋梺鍛婃⒐鐢繝骞冨Δ鍛嵍妞ゆ挾鍋樺Σ鎰版⒑缂佹ḿ鈯曢柣鐔濆洤绠悗锝庡枛缁犳煡鏌熸导瀛樻锭闁诡喕绶氬娲川婵犲倻顑傛繝鈷€鍕垫疁鐎殿喗濞婇幃銏ゆ偂鎼达綆鍞规俊鐐€栭弻銊╂倶濠靛牏鐜绘繛鎴欏灪閻撴瑩鎮归妸銉Ц闁稿﹤顭烽幃鐑藉閵堝棛鍘卞┑鐐叉閿氶柣蹇嬪劜閵囧嫰顢曢姀鈺佸壎閻庤娲滄繛鈧€殿喕绮欓、鏍敃閿濆懏璇為悗娈垮枟閹倿寮幘缁樻櫢闁跨噦鎷�

婵犵數鍋為崹鍫曞箰閹间緡鏁勯柛顐g贩瑜版帒鐐婃い鎺嗗亾鏉╂繃绻濋悽闈浶㈤悗姘煎櫍閹本鎯旈妸锔惧幘閻庤娲栧ú銈嗙濠婂牊鐓曢柣鎰摠鐏忥箓鏌熼挊澶娾偓濠氬焵椤掑﹦绉甸柛鎾村哺椤㈡棃濡舵径瀣化闂佽澹嬮弲娑欎繆閾忓湱纾奸柕濞у喚鏆梺鐟板槻閹冲酣銈导鏉戠闁靛ě鈧崑鎾寸節濮橆厾鍘搁柣搴秵閸嬪嫭鎱ㄩ崼銉︾厸鐎光偓閳ь剟宕版惔銊ョ厺闁哄啫鐗嗛崡鎶芥煟濡寧鐝慨锝呭閺岋絾鎯旈姀鈶╁闂佸憡姊圭敮鈥崇暦濠靛鍋勯柣鎾冲閵夆晜鐓ラ柣鏇炲€圭€氾拷

相关新闻
    生物通微信公众号
    微信
    新浪微博
    • 搜索
    • 国际
    • 国内
    • 人物
    • 产业
    • 热点
    • 科普
    • 急聘职位
    • 高薪职位

    知名企业招聘

    今日动态 | 人才市场 | 新技术专栏 | 中国科学人 | 云展台 | BioHot | 云讲堂直播 | 会展中心 | 特价专栏 | 技术快讯 | 免费试用

    版权所有 生物通

    Copyright© eBiotrade.com, All Rights Reserved

    联系信箱:

    粤ICP备09063491号